Dan,

That looks like a debian'ism to me, you might want to look at cron:
/etc/cron.daily/snort (I'm guessing on the name and location)
It probably gets started daily, and I'm guessing it doesn't kill the old
process correctly ????

Hope that this is at least a pointer in the right direction
(I'm guessing/assuming you downloaded the deb from debian, not from snort.org)

-- 
roel
Silicon Defense: Technical Support for Snort!
http://www.SiliconDefense.com
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